Medicinal Chemistry - Chemical Biology. Coordinator: Roberti

Research themes

The main research topics concern the design and synthesis of small molecules able to modulate molecular target involved in cancer development. The rational design of new molecules is carried out in collaboration with the computational pharmaceutical chemistry group (Prof. M. Masetti and Prof. A. Cavalli). The synthetic strategies applied include, in addition to "classical" methods, a combinatorial chemistry approach, working in parallel to obtain small libraries of drug-like molecules that are characterized by spectroscopic and spectrometric techniques. In addition, microwave-assisted synthesis is carried out according to a sustainable chemistry. In the following the two main projects are described.

Fig.1. a) Mechanism of synthetic lethality induced by the olabarib inhibitor PARP in BRCA-deficient tumor cellulules. b) Synthetic lethality mechanism induced by combination of olaparib and BRCA2-RAD51disruptors. In this case, synthetic lethality is completely induced by small organic molecules.

Design and synthesis of disruptors of Rad51/BRCA2 interaction
The Rad51/BRCA2 interaction is crucial for repairing damage to the double helix of DNA (homologous recombination (HR)). Since many antitumor drugs cause damage to the double strand of DNA, inhibiting HR can increase the sensitivity of cancer cells to these chemotherapeutics and other DNA damage repair inhibitors, such as PARP inhibitors.Olaparib was the first PARP inhibitor approved in 2014 for the treatment of breast cancer and pancreatic tumors with non-functioning BRCA2. In these patients, inhibiting PARP simultaneously compromises two independent mechanisms of DNA repair, thus inducing synthetic lethality and death of cancer cells. (Fig. 1A)The new inhibitors Rad51-BRCA2 can therefore be studied as chemosensitizing agents in association with chemotherapeutics that damage DNA or radiotherapy. In particular, they could chemically compromise the functioning of BRCA2 in patients where it is not defective and in association with olaparib trigger a synthetic lethality totally generated by small molecules, opening up new avenues for PARP-based inhibitors. The new paradigm could also be extended to other pairs of genes involved in different pathways of synthetic lethality (Fig.1B). 

Fig.2 Artificial intelligence supports the green synthesis of compounds that are of pharmaceutical interest.

Green synthesis of compounds of pharmaceutical interest supported by artificial intelligence
In this project, undertaken in the current year as part of a PON project concerning the GREEN thematic area, statistical methodology and computational modelling will be exploited for the design of green chemical reactions, capable of providing molecules of pharmaceutical interest with a low environmental impact and reduced costs. Through a combined approach, algorithms will be described that identify possible green reactions within the network of all known reactions and subsequently it will be demonstrated that the predicted sequences can be performed experimentally, with a reduction in the number of experiments and the environmental impact. In particular, we investigate GSK-3𝛽, a constitutively active and ubiquitously expressed serine/threonine protein kinase. GSK-3𝛽 is a promising target for the development of an effective disease modifying treatment in Alzheimer’s disease (AD).

Lab Members

Marinella Roberti, Associate Professor (e-mail)

Giovanni Ferrandi, PhD student- Synthesis of small molecules (e-mail)

Dominga Evangelista, PhD student - Computational modeling and design ( e-mail)  

Internship projects (2)

Two internship positions are available each year for undergraduates.  The students will contribute to the rational design of the molecules, considering their synthetic feasibility and with the support of computational methodologies.  The students will carry out literature search using online databases to keep updated about their research field. Moreover, they will discuss is scientific results with other members of the group, working on the same project.

Main publications

- Myers SH, Poppi L, Rinaldi F, Veronesi M, Ciamarone A, Previtali V, Bagnolini G, Schipani F, Ortega Martínez JA, Girotto S, Di Stefano G, Farabegoli F, Walsh N, De Franco F, Roberti M, Cavalli A. (2024). An ¹⁹F NMR fragment-based approach for the discovery and development of BRCA2-RAD51 inhibitors to pursuit synthetic lethality in combination with PARP inhibition in pancreatic cancer. Eur J Med Chem. Vol. 265, Article number 116114, doi: 10.1016/j.ejmech.2023.116114

- Bagnolini,G.,  Balboni, B., Schipani, F., Gioia ,D., Veronesi , M., De Franco , F,. Kaya , C., Jumde , R.P., Ortega ,J.A., Girotto , S., Hirsch , A.K.H., Roberti , M., Cavalli, A. (2022). Identification of RAD51-BRCA2 Inhibitors Using N-Acylhydrazone-Based Dynamic Combinatorial Chemistry. ACS Med Chem Lett. Vol. 13, 1262-1269, doi: 10.1021/acsmedchemlett.2c00063

- Mazzei, L., Contaldo, U., Musiani, F., Cianci, M., Bagnolini, G., Roberti, M., Stefano Ciurli, S. (2021).Inhibition of urease, a Ni-enzyme: the reactivity of a key thiol with mono- and di-substituted catechols elucidated by kinetic, structural and theoretical studies. ANGEW CHEM INT ED ENGL. vol. 60, p. 6029-6035, doi: 10.1002/anie.202014706

- Bagnolini G., Milano D., Manerba M., Schipani F., Ortega J. A., Gioia D., Falchi F., Balboni A., Farabegoli F., De Franco F., Robertson J., Pellicciari R., Pallavicini I., Peri S., Minucci S., Girotto S., Di Stefano G., Roberti M., Cavalli A. (2020). Synthetic Lethality in Pancreatic Cancer: Discovery of a New RAD51-BRCA2 Small Molecule Disruptor That Inhibits Homologous Recombination and Synergizes with Olaparib. JOURNAL OF MEDICINAL CHEMISTRY, vol. 63, p. 2588-2619, doi: 10.1021/acs.jmedchem.9b01526

- Roberti, M., Schipani, F., Bagnolini, G., Milano, D., Giacomini, E., Falchi, F., Balboni, A., Manerba, M., Farabegoli, F., De Franco, F., Robertson, J., Minucci, S., Pallavicini, I., Di Stefano, G., Girotto, S., Pellicciari, R., and Cavalli, A. (2019). Rad51/Brca2 Disruptors Inhibit Homologous Recombination and Synergize with Olaparib in Pancreatic Cancer Cells. EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, vol. 165, p. 80-92, doi: 10.1016/j.ejmech.2019.01.008