Publications

Tribello, Gareth A.; Bonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Armstrong, Blake I.; Arsiccio, Andrea; Aureli, Simone; Ballabio, Federico; Bernetti, Mattia; Bonati, Luigi; Brookes, Samuel G. H.; Brotzakis, Z. Faidon; Capelli, Riccardo; Ceriotti, Michele; Chan, Kam-Tung; Cossio, Pilar; Dasetty, Siva; Donadio, Davide; Ensing, Bernd; Ferguson, Andrew L.; Fraux, Guillaume; Gale, Julian D.; Gervasio, Francesco Luigi; Giorgino, Toni; Herringer, Nicholas S. M.; Hocky, Glen M.; Hoff, Samuel E.; Invernizzi, Michele; Languin-Cattoën, Olivier; Leone, Vanessa; Limongelli, Vittorio; Lopez-Acevedo, Olga; Marinelli, Fabrizio; Febrer Martinez, Pedro; Masetti, Matteo; Mehdi, Shams; Michaelides, Angelos; Murtada, Mhd Hussein; Parrinello, Michele; Piaggi, Pablo M.; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Pritchard, Claire; Raiteri, Paolo; Raniolo, Stefano; Rapetti, Daniele; Rizzi, Valerio; Rydzewski, Jakub; Salvalaglio, Matteo; Schran, Christoph; Seal, Aniruddha; Shayesteh, PLUMED Tutorials: A collaborative, community-driven learning ecosystem, «THE JOURNAL OF CHEMICAL PHYSICS», 2025, 162, pp. 1 - 14 [Scientific article]

Tursi, A.; Procaccianti, G.; D'Amico, F.; Bastiani, R. D.; Turroni, S., Can gut microbiota explain acute diverticulitis occurrence in patients with symptomatic uncomplicated diverticular disease?, «BMFH», 2025, 44, pp. 1 - 3 [Scientific article]

Tursi, Antonio; Turroni, Silvia; De Bastiani, Rudi; Procaccianti, Giorgia; D'Amico, Federica; Allegretta, Leonardo; Antonino, Natale; Baldi, Elisabetta; Casamassima, Carlo; Casella, Giovanni; Ciuffi, Mario; De Bastiani, Marco; Lazzarotto, Lorenzo; Licci, Claudio; Mancuso, Maurizio; Penna, Antonio; Pranzo, Giuseppe; Sanna, Guido; Tosetti, Cesare; Zamparella, Maria; Picchio, Marcello, Gut microbiota in symptomatic uncomplicated diverticular disease stratifies by severity of abdominal pain, «EUROPEAN JOURNAL OF GASTROENTEROLOGY & HEPATOLOGY», 2025, 37, pp. 147 - 153 [Scientific article]

Monti, E.; Vianello, C.; Leoni, I.; Galvani, G.; Lippolis, A.; D'Amico, F.; Roggiani, S.; Stefanelli, C.; Turroni, S.; Fornari, F., Gut Microbiome Modulation in Hepatocellular Carcinoma: Preventive Role in NAFLD/NASH Progression and Potential Applications in Immunotherapy-Based Strategies, «CELLS», 2025, 14, pp. 1 - 30 [Scientific article] Open Access

Tropeano, C. V.; La Morgia, C.; Achilli, A.; Iommarini, L.; Tioli, G.; Caporali, L.; Olivieri, A.; Valentino, M. L.; Liguori, R.; Barboni, P.; Martinuzzi, A.; Tonon, C.; Lodi, R.; Torroni, A.; Carelli, V.; Ghelli, A. M., Adult Leigh Syndrome Associated with the m.15635T>C Mitochondrial DNA Variant Affecting the Cytochrome b (MT-CYB) Gene, «INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES», 2025, 26, pp. 1 - 14 [Scientific article] Open Access

Lupini, Caterina; Gentile, Nicla; Graziosi, Giulia; Quaglia, Giulia; Lizzi, Gabriele; Pedrazzoli, Sara; Tucciarone, Claudia M.; Franzo, Giovanni; Legnardi, Matteo; Baston, Riccardo; Cecchinato, Mattia; Menotti, Laura; Brandimarti, Renato; Avitabile, Elisa; Catelli, Elena, Avian metapneumovirus subtype B in a Northern shoveler (Spatula clypeata) wintering in Italy: implications for the domestic-wild bird interface?, «AVIAN PATHOLOGY», 2025, 54, pp. 351 - 358 [Scientific article]

Poeta, E.; Massenzio, F.; Babini, G.; Monti, B., Cell-Based Assays to Assess Neuroprotective Activity, in: Methods in Neurodegenerative Disease Drug Discovery, Barcellona, Diego Muñoz-Torrero, 2025, pp. 207 - 255 (NEUROMETHODS) [Chapter or essay]

Mattioli, Francesco; Galloni, Costanza; Alberti, Chiara; Bonali, Marco; Lo Manto, Alfredo; Baraldi, Stella; Tonelli, Roberto; Nizzoli, Federica; Reggiani, Elena; Barbazza, Alice; Liberale, Carlotta; Ferrari, Marco; Fermi, Matteo; Alicandri-Ciufelli, Matteo; Fernandez, Ignacio Javier; Zanoletti, Elisabetta; Nicolai, Piero; Marchioni, Daniele, Facial Nerve Graft in Malignant Tumors: The Role of Facial Rehabilitation, «JOURNAL OF CLINICAL MEDICINE», 2025, 14, pp. 1 - 12 [Scientific article] Open Access

Zalambani, C.; Anconelli, L.; Calonghi, N.; Telese, D.; Micheletti, G.; Boga, C.; Farruggia, G.; Pagnotta, E., New Compounds with Enhanced Biological Activity Through the Strategic Introduction of Silylated Groups into Hydroxystearic Acids, «MOLECULES», 2025, 30, pp. 1 - 18 [Scientific article] Open Access

Graziosi, A.; Corrieri, C.; Sita, G.; Ghelli, L.; Angelini, S.; di Villa Bianca, R. d.; Mitidieri, E.; Sorrentino, R.; Hrelia, P.; Morroni, F., Impact of 17-alpha ethinyl estradiol (EE2) and diethyl phthalate (DEP) exposure on microRNAs expression and their target genes in differentiated SH-SY5Y cells, «SCIENTIFIC REPORTS», 2025, 15, pp. 1 - 15 [Scientific article]

Mezzetti, A.; Malferrari, M.; Venturoli, G.; Francia, F.; Leibl, W.; Noda, I., Rapid-Scan Fourier Transform Infrared Difference Spectroscopy with Two-Dimensional Correlation Analysis to Show the Build-Up of Light-Adapted States in Bacterial Photosynthetic Reaction Centers, «APPLIED SPECTROSCOPY», 2025, 0, pp. 1 - 11 [Scientific article]

Romeo, E.; Saccoliti, F.; Ocello, R.; Andonaia, A.; Allegretta, C.; Pastorino, C.; Pedemonte, N.; Falchi, F.; Laselva, O.; Bandiera, T.; Bertozzi, F., Target Identification with Live-Cell Photoaffinity Labeling and Mechanism of Action Elucidation of ARN23765, a Highly Potent CFTR Corrector, «JOURNAL OF MEDICINAL CHEMISTRY», 2025, 68, pp. 4596 - 4618 [Scientific article]

Pietrantonio, Laura; Devers-Lamrani, Marion; Thorpe, Peter; Arnton, Catherine; Robertson-Albertyn, Senga; Savojardo, Castrense; Hartmann, Alain; Martin-Laurent, Fabrice; Abbott, James; Bulgarelli, Davide, A genome-annotated bacterial collection of the plant food system microbiota, «MICROBIOLOGY RESOURCE ANNOUNCEMENTS», 2025, 14, pp. 1 - 6 [Scientific article]

Savojardo, Castrense; Manfredi, Matteo; Martelli, Pier Luigi; Casadio, Rita, DDGemb: predicting protein stability change upon single- and multi-point variations with embeddings and deep learning, «BIOINFORMATICS», 2025, 41, pp. 1 - 7 [Scientific article]

Manfredi, Matteo; Vazzana, Gabriele; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita, AlphaFold2 and ESMFold: A large-scale pairwise model comparison of human enzymes upon Pfam functional annotation, «COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL», 2025, 27, pp. 461 - 466 [Scientific article]

Chen, Yile; Lee, Kyoungyeul; Woo, Junwoo; Kim, Dong-wook; Keum, Changwon; Babbi, Giulia; Casadio, Rita; Martelli, Pier Luigi; Savojardo, Castrense; Manfredi, Matteo; Shen, Yang; Sun, Yuanfei; Katsonis, Panagiotis; Lichtarge, Olivier; Pejaver, Vikas; Seward, David J.; Kamandula, Akash; Bakolitsa, Constantina; Brenner, Steven E.; Radivojac, Predrag; O'Donnell-Luria, Anne; Mooney, Sean D.; Jain, Shantanu, Evaluating predictors of kinase activity of STK11 variants identified in primary human non-small cell lung cancers, «HUMAN GENETICS», 2025, 1, pp. 1 - 16 [Scientific article]

Upton, Dannielle H; Liu, Jie; George, Sandra M; Valvi, Santosh; Ung, Caitlin; Rayner, Benjamin S; Gopalakrishnan, Anjana; Pandher, Ruby; Khan, Aaminah; Venkat, Pooja; Mayoh, Chelsea; Holliday, Holly; Yeung, Nicole; Nguyen, Hieu; Franshaw, Laura; Ehteda, Anahid; Shen, Han; Farruggia, Giovanna; Orienti, Isabella; Reynolds, C Patrick; Tsoli, Maria; Ziegler, David S, High-throughput in vitro drug screening and in vivo studies identify fenretinide as a brain-penetrant DMG therapeutic, «NEURO-ONCOLOGY», 2025, Non conosciuto, pp. N/A - N/A [Scientific article]

Uliassi, E.; Bolognesi, M. L.; Milelli, A., Targeting Tau Protein with Proximity Inducing Modulators: A New Frontier to Combat Tauopathies, «ACS PHARMACOLOGY & TRANSLATIONAL SCIENCE», 2025, 8, pp. 654 - 672 [Scientific article]

Interino, N.; Vitagliano, R.; D'Amico, F.; Lodi, R.; Porru, E.; Turroni, S.; Fiori, J., Microbiota–Gut–Brain Axis: Mass-Spectrometry-Based Metabolomics in the Study of Microbiome Mediators—Stress Relationship, «BIOMOLECULES», 2025, 15, pp. 1 - 28 [Scientific article] Open Access

Bovo, S; Ribani, A; Fanelli, F; Galimberti, G; Martelli, Pl; Trevisi, P; Bertolini, F; Bolner, M; Casadio, R; Dall'Olio, S; Gallo, M; Luise, D; Mazzoni, G; Schiavo, G; Taurisano, V; Zambonelli, P; Bosi, P; Pagotto, U; Fontanesi, L, Merging metabolomics and genomics provides a catalog of genetic factors that influence molecular phenotypes in pigs linking relevant metabolic pathways, «GENETICS SELECTION EVOLUTION», 2025, 57, pp. 1 - 27 [Scientific article] Open Access